PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924639.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 366aa    MW: 40767.8 Da    PI: 7.6886
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924639.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.42.7e-14292317126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ + ++G+C+yG++C+FaHg
  XP_010924639.1 292 FKTELCNKWEESGECPYGENCQFAHG 317
                     79***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.7E-18286324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-10288323IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8291318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986291319IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-11292317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-11325355IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-8326355IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-4329356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375329357IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSPLGSETVA NRMQQKLLTP TNSDRLRSAI GTAPFLSPDR RFSCPPYFAN DGDSFWPYAS  60
VISTTEETTT RVTQPTGSGS VSLNPSTVSF DEEDPTGTEN RLYLARLTLQ YREIAEHYDL  120
CLSHLQEAAQ EAEALRLENA KLRIANSELA KRLNLLSGKQ NWQIASPAAG GHPILSIVDE  180
FGRLSVGEPP AETSPTSVLA FRENQFARRA TEKRGLPLKS ISVRSNGYLK LNQGVSAANR  240
NDRLRVSSPV MVDSQKVCVG GASKKKGERR GREEDEERGE ALDLEVYNQG MFKTELCNKW  300
EESGECPYGE NCQFAHGITE LRPVIRHPRY KTQICRMILA GDTCPYGHRC HFRHTSPSDC  360
FLLRPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-21292356468Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924639.10.0PREDICTED: zinc finger CCCH domain-containing protein 9-like
TrEMBLM0SMY61e-112M0SMY6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P11210_0011e-112(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-59C3H family protein